A modular tool to aggregate results from bioinformatics analyses across many samples into a single report.
Report
generated on 2024-09-03, 09:41 EDT
based on data in:
/work/gmgi/Fisheries/epiage/haddock/methylation/meth_extracted2
General Statistics
Showing 72/72 rows and 4/4 columns.
| Sample Name | % mCpG | % mCHG | % mCHH | M C's |
|---|---|---|---|---|
| Mae-265_S1_R1_001_val_1 | 64.4% | 1.3% | 8.3% | 1177.2 |
| Mae-271_S2_R1_001_val_1 | 63.8% | 1.3% | 13.1% | 989.0 |
| Mae-275_S3_R1_001_val_1 | 64.6% | 1.2% | 13.9% | 710.6 |
| Mae-282_S4_R1_001_val_1 | 65.4% | 1.3% | 9.7% | 1415.0 |
| Mae-284_S5_R1_001_val_1 | 62.4% | 1.0% | 6.2% | 1049.9 |
| Mae-286_S6_R1_001_val_1 | 64.3% | 1.1% | 10.4% | 912.2 |
| Mae-288_S7_R1_001_val_1 | 66.8% | 1.2% | 12.5% | 831.8 |
| Mae-292_S8_R1_001_val_1 | 64.2% | 1.2% | 10.6% | 800.4 |
| Mae-299_S9_R1_001_val_1 | 64.9% | 1.1% | 11.2% | 664.8 |
| Mae-300_S10_R1_001_val_1 | 64.2% | 1.1% | 11.0% | 979.7 |
| Mae-303_S11_R1_001_val_1 | 64.2% | 1.2% | 12.8% | 871.0 |
| Mae-304_S12_R1_001_val_1 | 65.6% | 1.1% | 9.8% | 1207.3 |
| Mae-324_S13_R1_001_val_1 | 65.3% | 1.1% | 8.1% | 1211.8 |
| Mae-325_S14_R1_001_val_1 | 66.7% | 1.1% | 8.5% | 1029.7 |
| Mae-331_S15_R1_001_val_1 | 64.1% | 1.1% | 9.1% | 867.8 |
| Mae-332_S16_R1_001_val_1 | 65.2% | 1.2% | 11.1% | 1292.5 |
| Mae-334_S17_R1_001_val_1 | 65.9% | 1.2% | 9.9% | 854.4 |
| Mae-337_S18_R1_001_val_1 | 65.4% | 1.2% | 7.9% | 1176.8 |
| Mae-340_S19_R1_001_val_1 | 64.6% | 1.2% | 8.4% | 1382.9 |
| Mae-346_S20_R1_001_val_1 | 65.3% | 1.8% | 11.3% | 1191.0 |
| Mae-348_S21_R1_001_val_1 | 64.0% | 1.3% | 10.8% | 1402.3 |
| Mae-351_S22_R1_001_val_1 | 65.9% | 1.2% | 6.4% | 1186.4 |
| Mae-355_S23_R1_001_val_1 | 63.3% | 1.2% | 7.7% | 1414.7 |
| Mae-358_S24_R1_001_val_1 | 66.0% | 1.1% | 8.3% | 2080.2 |
| Mae-363_S25_R1_001_val_1 | 66.0% | 1.2% | 5.8% | 1012.3 |
| Mae-364_S26_R1_001_val_1 | 66.9% | 1.2% | 7.8% | 1064.2 |
| Mae-366_S27_R1_001_val_1 | 64.8% | 1.2% | 7.3% | 905.7 |
| Mae-374_S28_R1_001_val_1 | 65.7% | 1.1% | 8.8% | 931.3 |
| Mae-377_S29_R1_001_val_1 | 64.5% | 1.2% | 8.2% | 1152.8 |
| Mae-379_S71_R1_001_val_1 | 66.2% | 1.2% | 7.2% | 1516.1 |
| Mae-381_S30_R1_001_val_1 | 64.3% | 1.2% | 10.7% | 1230.2 |
| Mae-384_S72_R1_001_val_1 | 63.1% | 1.0% | 7.6% | 1095.0 |
| Mae-386_S31_R1_001_val_1 | 65.1% | 1.2% | 7.8% | 1087.7 |
| Mae-394_S32_R1_001_val_1 | 65.9% | 1.3% | 7.1% | 1487.8 |
| Mae-398_S33_R1_001_val_1 | 65.9% | 1.2% | 8.5% | 862.4 |
| Mae-404_S34_R1_001_val_1 | 68.8% | 1.2% | 6.2% | 1317.8 |
| Mae-407_S35_R1_001_val_1 | 66.8% | 1.3% | 7.4% | 1561.2 |
| Mae-409_S36_R1_001_val_1 | 66.1% | 1.1% | 5.7% | 930.8 |
| Mae-412_S37_R1_001_val_1 | 64.5% | 1.4% | 9.5% | 1115.1 |
| Mae-418_S38_R1_001_val_1 | 65.0% | 1.4% | 8.7% | 1513.7 |
| Mae-423_S39_R1_001_val_1 | 62.6% | 1.1% | 7.9% | 1412.3 |
| Mae-426_S40_R1_001_val_1 | 65.5% | 1.1% | 6.2% | 1303.9 |
| Mae-430_S51_R1_001_val_1 | 65.7% | 1.1% | 6.7% | 1140.3 |
| Mae-431_S41_R1_001_val_1 | 64.9% | 1.3% | 9.2% | 1127.7 |
| Mae-435_S42_R1_001_val_1 | 66.0% | 1.3% | 7.1% | 1553.5 |
| Mae-438_S43_R1_001_val_1 | 65.6% | 1.1% | 7.3% | 1571.6 |
| Mae-443_S44_R1_001_val_1 | 62.7% | 1.3% | 8.0% | 1088.4 |
| Mae-447_S45_R1_001_val_1 | 63.5% | 1.3% | 6.6% | 752.4 |
| Mae-450_S46_R1_001_val_1 | 65.8% | 1.2% | 5.5% | 1147.1 |
| Mae-451_S47_R1_001_val_1 | 66.0% | 1.2% | 7.1% | 1221.3 |
| Mae-456_S48_R1_001_val_1 | 66.5% | 1.2% | 8.6% | 713.1 |
| Mae-458_S49_R1_001_val_1 | 64.7% | 1.3% | 7.6% | 864.2 |
| Mae-459_S50_R1_001_val_1 | 62.9% | 1.3% | 8.7% | 1498.7 |
| Mae-466_S52_R1_001_val_1 | 65.5% | 1.1% | 5.9% | 1011.5 |
| Mae-472_S53_R1_001_val_1 | 66.9% | 1.1% | 5.6% | 896.4 |
| Mae-473_S54_R1_001_val_1 | 66.0% | 1.2% | 7.0% | 779.7 |
| Mae-479_S55_R1_001_val_1 | 66.0% | 1.2% | 8.4% | 969.0 |
| Mae-482_S56_R1_001_val_1 | 64.0% | 1.2% | 6.3% | 965.4 |
| Mae-486_S57_R1_001_val_1 | 63.6% | 1.2% | 7.0% | 1047.7 |
| Mae-494_S58_R1_001_val_1 | 66.6% | 1.1% | 5.5% | 710.1 |
| Mae-500_S59_R1_001_val_1 | 64.6% | 1.0% | 3.8% | 931.1 |
| Mae-504_S60_R1_001_val_1 | 63.8% | 1.2% | 8.3% | 1131.8 |
| Mae-508_S61_R1_001_val_1 | 65.6% | 1.3% | 5.9% | 2312.9 |
| Mae-510_S62_R1_001_val_1 | 65.6% | 1.1% | 8.5% | 1296.9 |
| Mae-511_S63_R1_001_val_1 | 62.9% | 1.2% | 5.5% | 1583.6 |
| Mae-517_S64_R1_001_val_1 | 63.6% | 1.4% | 5.6% | 1061.7 |
| Mae-518_S65_R1_001_val_1 | 63.1% | 1.4% | 10.3% | 989.4 |
| Mae-522_S66_R1_001_val_1 | 64.7% | 1.4% | 8.8% | 2146.8 |
| Mae-523_S67_R1_001_val_1 | 65.3% | 1.3% | 11.2% | 1551.4 |
| Mae-530_S68_R1_001_val_1 | 64.0% | 1.2% | 8.8% | 1010.2 |
| Mae-534_S69_R1_001_val_1 | 65.1% | 1.1% | 8.7% | 1323.9 |
| Mae-536_S70_R1_001_val_1 | 63.8% | 1.1% | 8.5% | 1298.2 |
Bismark
Version:
0.24.2
Bismark is a tool to map bisulfite converted sequence reads and determine cytosine methylation states.DOI: 10.1093/bioinformatics/btr167.
Cytosine Methylation
Created with MultiQC
M-Bias
This plot shows the average percentage methylation and coverage across reads. See the bismark user guide for more information on how these numbers are generated.
Created with MultiQC
Software Versions
Software Versions lists versions of software tools extracted from file contents.
| Software | Version |
|---|---|
| Bismark | 0.24.2 |
