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        Note that additional data was saved in meth_extract_multiqc_report2_data when this report was generated.


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        If you use plots from MultiQC in a publication or presentation, please cite:

        MultiQC: Summarize analysis results for multiple tools and samples in a single report
        Philip Ewels, Måns Magnusson, Sverker Lundin and Max Käller
        Bioinformatics (2016)
        doi: 10.1093/bioinformatics/btw354
        PMID: 27312411

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        About MultiQC

        This report was generated using MultiQC, version 1.21

        You can see a YouTube video describing how to use MultiQC reports here: https://youtu.be/qPbIlO_KWN0

        For more information about MultiQC, including other videos and extensive documentation, please visit http://multiqc.info

        You can report bugs, suggest improvements and find the source code for MultiQC on GitHub: https://github.com/MultiQC/MultiQC

        MultiQC is published in Bioinformatics:

        MultiQC: Summarize analysis results for multiple tools and samples in a single report
        Philip Ewels, Måns Magnusson, Sverker Lundin and Max Käller
        Bioinformatics (2016)
        doi: 10.1093/bioinformatics/btw354
        PMID: 27312411

        A modular tool to aggregate results from bioinformatics analyses across many samples into a single report.

        Report generated on 2024-09-03, 09:41 EDT based on data in: /work/gmgi/Fisheries/epiage/haddock/methylation/meth_extracted2


        General Statistics

        Showing 72/72 rows and 4/4 columns.
        Sample Name% mCpG% mCHG% mCHHM C's
        Mae-265_S1_R1_001_val_1
        64.4%
        1.3%
        8.3%
        1177.2
        Mae-271_S2_R1_001_val_1
        63.8%
        1.3%
        13.1%
        989.0
        Mae-275_S3_R1_001_val_1
        64.6%
        1.2%
        13.9%
        710.6
        Mae-282_S4_R1_001_val_1
        65.4%
        1.3%
        9.7%
        1415.0
        Mae-284_S5_R1_001_val_1
        62.4%
        1.0%
        6.2%
        1049.9
        Mae-286_S6_R1_001_val_1
        64.3%
        1.1%
        10.4%
        912.2
        Mae-288_S7_R1_001_val_1
        66.8%
        1.2%
        12.5%
        831.8
        Mae-292_S8_R1_001_val_1
        64.2%
        1.2%
        10.6%
        800.4
        Mae-299_S9_R1_001_val_1
        64.9%
        1.1%
        11.2%
        664.8
        Mae-300_S10_R1_001_val_1
        64.2%
        1.1%
        11.0%
        979.7
        Mae-303_S11_R1_001_val_1
        64.2%
        1.2%
        12.8%
        871.0
        Mae-304_S12_R1_001_val_1
        65.6%
        1.1%
        9.8%
        1207.3
        Mae-324_S13_R1_001_val_1
        65.3%
        1.1%
        8.1%
        1211.8
        Mae-325_S14_R1_001_val_1
        66.7%
        1.1%
        8.5%
        1029.7
        Mae-331_S15_R1_001_val_1
        64.1%
        1.1%
        9.1%
        867.8
        Mae-332_S16_R1_001_val_1
        65.2%
        1.2%
        11.1%
        1292.5
        Mae-334_S17_R1_001_val_1
        65.9%
        1.2%
        9.9%
        854.4
        Mae-337_S18_R1_001_val_1
        65.4%
        1.2%
        7.9%
        1176.8
        Mae-340_S19_R1_001_val_1
        64.6%
        1.2%
        8.4%
        1382.9
        Mae-346_S20_R1_001_val_1
        65.3%
        1.8%
        11.3%
        1191.0
        Mae-348_S21_R1_001_val_1
        64.0%
        1.3%
        10.8%
        1402.3
        Mae-351_S22_R1_001_val_1
        65.9%
        1.2%
        6.4%
        1186.4
        Mae-355_S23_R1_001_val_1
        63.3%
        1.2%
        7.7%
        1414.7
        Mae-358_S24_R1_001_val_1
        66.0%
        1.1%
        8.3%
        2080.2
        Mae-363_S25_R1_001_val_1
        66.0%
        1.2%
        5.8%
        1012.3
        Mae-364_S26_R1_001_val_1
        66.9%
        1.2%
        7.8%
        1064.2
        Mae-366_S27_R1_001_val_1
        64.8%
        1.2%
        7.3%
        905.7
        Mae-374_S28_R1_001_val_1
        65.7%
        1.1%
        8.8%
        931.3
        Mae-377_S29_R1_001_val_1
        64.5%
        1.2%
        8.2%
        1152.8
        Mae-379_S71_R1_001_val_1
        66.2%
        1.2%
        7.2%
        1516.1
        Mae-381_S30_R1_001_val_1
        64.3%
        1.2%
        10.7%
        1230.2
        Mae-384_S72_R1_001_val_1
        63.1%
        1.0%
        7.6%
        1095.0
        Mae-386_S31_R1_001_val_1
        65.1%
        1.2%
        7.8%
        1087.7
        Mae-394_S32_R1_001_val_1
        65.9%
        1.3%
        7.1%
        1487.8
        Mae-398_S33_R1_001_val_1
        65.9%
        1.2%
        8.5%
        862.4
        Mae-404_S34_R1_001_val_1
        68.8%
        1.2%
        6.2%
        1317.8
        Mae-407_S35_R1_001_val_1
        66.8%
        1.3%
        7.4%
        1561.2
        Mae-409_S36_R1_001_val_1
        66.1%
        1.1%
        5.7%
        930.8
        Mae-412_S37_R1_001_val_1
        64.5%
        1.4%
        9.5%
        1115.1
        Mae-418_S38_R1_001_val_1
        65.0%
        1.4%
        8.7%
        1513.7
        Mae-423_S39_R1_001_val_1
        62.6%
        1.1%
        7.9%
        1412.3
        Mae-426_S40_R1_001_val_1
        65.5%
        1.1%
        6.2%
        1303.9
        Mae-430_S51_R1_001_val_1
        65.7%
        1.1%
        6.7%
        1140.3
        Mae-431_S41_R1_001_val_1
        64.9%
        1.3%
        9.2%
        1127.7
        Mae-435_S42_R1_001_val_1
        66.0%
        1.3%
        7.1%
        1553.5
        Mae-438_S43_R1_001_val_1
        65.6%
        1.1%
        7.3%
        1571.6
        Mae-443_S44_R1_001_val_1
        62.7%
        1.3%
        8.0%
        1088.4
        Mae-447_S45_R1_001_val_1
        63.5%
        1.3%
        6.6%
        752.4
        Mae-450_S46_R1_001_val_1
        65.8%
        1.2%
        5.5%
        1147.1
        Mae-451_S47_R1_001_val_1
        66.0%
        1.2%
        7.1%
        1221.3
        Mae-456_S48_R1_001_val_1
        66.5%
        1.2%
        8.6%
        713.1
        Mae-458_S49_R1_001_val_1
        64.7%
        1.3%
        7.6%
        864.2
        Mae-459_S50_R1_001_val_1
        62.9%
        1.3%
        8.7%
        1498.7
        Mae-466_S52_R1_001_val_1
        65.5%
        1.1%
        5.9%
        1011.5
        Mae-472_S53_R1_001_val_1
        66.9%
        1.1%
        5.6%
        896.4
        Mae-473_S54_R1_001_val_1
        66.0%
        1.2%
        7.0%
        779.7
        Mae-479_S55_R1_001_val_1
        66.0%
        1.2%
        8.4%
        969.0
        Mae-482_S56_R1_001_val_1
        64.0%
        1.2%
        6.3%
        965.4
        Mae-486_S57_R1_001_val_1
        63.6%
        1.2%
        7.0%
        1047.7
        Mae-494_S58_R1_001_val_1
        66.6%
        1.1%
        5.5%
        710.1
        Mae-500_S59_R1_001_val_1
        64.6%
        1.0%
        3.8%
        931.1
        Mae-504_S60_R1_001_val_1
        63.8%
        1.2%
        8.3%
        1131.8
        Mae-508_S61_R1_001_val_1
        65.6%
        1.3%
        5.9%
        2312.9
        Mae-510_S62_R1_001_val_1
        65.6%
        1.1%
        8.5%
        1296.9
        Mae-511_S63_R1_001_val_1
        62.9%
        1.2%
        5.5%
        1583.6
        Mae-517_S64_R1_001_val_1
        63.6%
        1.4%
        5.6%
        1061.7
        Mae-518_S65_R1_001_val_1
        63.1%
        1.4%
        10.3%
        989.4
        Mae-522_S66_R1_001_val_1
        64.7%
        1.4%
        8.8%
        2146.8
        Mae-523_S67_R1_001_val_1
        65.3%
        1.3%
        11.2%
        1551.4
        Mae-530_S68_R1_001_val_1
        64.0%
        1.2%
        8.8%
        1010.2
        Mae-534_S69_R1_001_val_1
        65.1%
        1.1%
        8.7%
        1323.9
        Mae-536_S70_R1_001_val_1
        63.8%
        1.1%
        8.5%
        1298.2

        Bismark

        Version: 0.24.2

        Bismark is a tool to map bisulfite converted sequence reads and determine cytosine methylation states.DOI: 10.1093/bioinformatics/btr167.

        Cytosine Methylation

        Created with MultiQC

        M-Bias

        This plot shows the average percentage methylation and coverage across reads. See the bismark user guide for more information on how these numbers are generated.

        Created with MultiQC

        Software Versions

        Software Versions lists versions of software tools extracted from file contents.

        SoftwareVersion
        Bismark0.24.2